All species of yew contain highly poisonous taxine alkaloids, with some variation in the exact formula of the alkaloid between the species. All parts of the tree except the arils contain the alkaloid. The arils are edible and sweet, but the seed is dangerously poisonous; unlike birds, the human stomach can break down the seed coat and release the toxins into the body. This can have fatal results if yew 'berries' are eaten without removing the seeds first. Grazing animals, particularly cattle and horses, are also sometimes found dead near yew trees after eating the leaves, though deer are able to break down the poisons and will eat yew foliage freely. In the wild, deer browsing of yews is often so extensive that wild yew trees are commonly restricted to cliffs and other steep slopes inaccessible to deer. The foliage is also eaten by the larvae of some Lepidopteran insects including the moth willow beauty.

All parts of a yew plant are toxic to humans with the exception of the yew berries (which however contain a toxic seed); additionally, male and dioecious yews in this genus release cytotoxic pollen, which can cause headaches, lethargy, aching joints, itching, and skin rashes; it is also a trigger for asthma. These pollen granules are extremely small, and can easily pass through window screens. Male yews bloom and release abundant amounts of pollen in the spring; completely female yews only trap pollen while producing none. Yews in this genus are primarily separate-sexed, and males are extremely allergenic, with an OPALS allergy scale rating of 10 out of 10. Completely female yews have an OPALS rating of 1, and are considered "allergy-fighting".